YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nac-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.96
Transmembrane Helix	51	68	0.85
Non-Cytoplasmic	69	92	0.77
Transmembrane Helix	93	112	0.86
Cytoplasmic	113	124	0.66
Transmembrane Helix	125	142	0.67
Non-Cytoplasmic	143	161	0.73
Transmembrane Helix	162	183	0.74
Cytoplasmic	184	219	0.82
Transmembrane Helix	220	241	0.89
Non-Cytoplasmic	242	268	0.89
Transmembrane Helix	269	288	0.94
Cytoplasmic	289	316	0.91
Transmembrane Helix	317	336	0.88
Non-Cytoplasmic	337	352	0.80
Transmembrane Helix	353	372	0.87
Cytoplasmic	373	400	0.90
Transmembrane Helix	401	420	0.92
Non-Cytoplasmic	421	440	0.85
Transmembrane Helix	441	472	0.76
Cytoplasmic	473	483	0.71
Transmembrane Helix	484	504	0.88
Non-Cytoplasmic	505	520	0.74
Transmembrane Helix	521	548	0.75
Cytoplasmic	549	566	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSLHLSGW PENSESRQRM LESSSSTNFV QHFVSREISN KERLLSLFRR LRNGLVLVLT  60
   61 PLFFGQMLNW EGPEWKCAYC VCIIAVYWMS EVMPLAVTAM LPVVLFPLVG VLDANTTAKE 120
  121 YMNDTNFLFI GGLIMAAAVE KCDLHERVAL SVLRCVGSEP KWIMLGFMTV TALLSSFISN 180
  181 TATTAMMVPI GQSVVQQLIS SFQHHPTNGE RGRLGCKKMA TGLVLSICFA ANIGGTGTAT 240
  241 GTPSNLVMLG QLSALFPKVD GSLNYVTWIF FAYPLMLLCL FVAWMTLVSF FLRDAPEKDE 300
  301 AVTEMLKTRY NELPRMTYAE KSVFVCFCIL LSLWVFRNPG VVPGFGVFFK KGAYTDATSA 360
  361 MIVAFLLFVL PSERPDLATY IKKEDLKKRG CLMDWKTMQE TFPWSVVLLL GGGFALAAGV 420
  421 KESGLSLLIG NSLSSIEHLP LWILQLLTML IAMVITNICS NTVTASIFVP IVATLAQRAG 480
  481 HHPFTLMLPT TLASSFAFIF PVGTPPNAIV FGSGMVKVSD MAFVGGIISL ELLVLTVLYM 540
  541 NSIAYLTLPL LEFPTWAIIA NSTMQQ