YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-32
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDYAENSFN VIPISMEYIR DLRTATSFRV YVIYIDLVLI LALFLSIHAI RELTSKQLFS  60
   61 KSITHLLIAS LVYGNVHNAS YTIIETWSLY RSFAYSDNMT AIMFTSEECF VQHVLNSCVR 120
  121 FLFIAIELAL NVDRIIVILF RKHFHCYPGV RGEILNILAV ILSFALGCLL HLKGPHPGIV 180
  181 TTSCFRETDI TINLCSTNLT SYTILSACCA ALDFLMMWYT WNDRKKINYD LNSQYLKVEQ 240
  241 HHSLMAVSLN SLLQLFVTSI YAISMFVLAN MSMTNPELGN ANLLRWFYTT PYSTLLVPIQ 300
  301 IKVFIQWIGN RRKRRINTAT RVSLTQDGYF TKLSDSWK

Type	Start	End	Confidence
Cytoplasmic	1	29	0.54
Transmembrane Helix	30	50	0.92
Non-Cytoplasmic	51	117	0.49
Transmembrane Helix	118	132	0.63
Cytoplasmic	133	153	0.74
Transmembrane Helix	154	173	0.92
Non-Cytoplasmic	174	198	0.94
Transmembrane Helix	199	221	0.88
Cytoplasmic	222	245	0.92
Transmembrane Helix	246	269	0.82
Non-Cytoplasmic	270	285	0.88
Transmembrane Helix	286	305	0.91
Cytoplasmic	306	338	0.93