YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-30
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTNQTATEL ELFRCTSSGI LEAMNSIWIK INFFLSTSII LLTFFASIYA VRVLKFHNVY  60
   61 SSGTQFLLFS LLISVNFNQM VYLVIQVRLQ IQIWKYSDDP CQIEFPSTEC YYDNSLYMFT 120
  121 SYLVTWLVFS LTFDRNRIFF LKIFQSFFSC FNKLSLKYYT FQLIFTFIGH ILVYGGVSRA 180
  181 GYVPTCQYPP QLALGAFQKM THLKIVFTIL NCVVILILLC FIVKRDRRIC HSIYDTNTRY 240
  241 SSFENVLTTK SILVIAVTHL IFSCLSSVAV TIARAFEIGL SEYTFHTMTQ FIAGPLYGNL 300
  301 SIPVLIYRKT SQCIEYRRKT IIKLTTQADE VDSRMMSLKK MWE

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.56
Transmembrane Helix	28	51	0.86
Cytoplasmic	52	62	0.43
Transmembrane Helix	63	85	0.76
Non-Cytoplasmic	86	114	0.66
Transmembrane Helix	115	133	0.62
Cytoplasmic	134	157	0.84
Transmembrane Helix	158	178	0.86
Non-Cytoplasmic	179	201	0.90
Transmembrane Helix	202	223	0.94
Cytoplasmic	224	251	0.94
Transmembrane Helix	252	273	0.88
Non-Cytoplasmic	274	287	0.76
Transmembrane Helix	288	307	0.83
Cytoplasmic	308	343	0.89