YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-25
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELIDGPKC ASEGIVNAMT SIPVKISFLI IATVIFLSFY FARLAILALL RNNIFSNSTQ  60
   61 RILLVCLVNS VFHQAATLEI RIHQVYRSFV YASDPCSLLF HFTECEVELY FYYLTNYFST 120
  121 YSVFSLTFDR LISHYNPRFY FSQQNFVSNT LLIIQCLLSF GTYYVGLYGV PPFGYVSICY 180
  181 YTPKYAVNFL KINDFRTVVM VFCIIVIIFV YYLSVRSEKQ IQRTSYSPGE RYWAYENVET 240
  241 SQSVCILIVL QFACILMSSY GVNYIRSKES MMSEEDFHTL APFFAGVTYA SLCLPLVIYF 300
  301 KTKLTIRNRR IRIAVMTSMY GDVGDHMNRL KKSWE

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.55
Transmembrane Helix	24	47	0.84
Cytoplasmic	48	61	0.51
Transmembrane Helix	62	77	0.44
Non-Cytoplasmic	78	108	0.51
Transmembrane Helix	109	128	0.50
Cytoplasmic	129	145	0.86
Transmembrane Helix	146	167	0.89
Non-Cytoplasmic	168	194	0.92
Transmembrane Helix	195	215	0.93
Cytoplasmic	216	242	0.89
Transmembrane Helix	243	262	0.89
Non-Cytoplasmic	263	279	0.89
Transmembrane Helix	280	300	0.95
Cytoplasmic	301	335	0.95