YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-24
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTAEEIVE SRRCASEGLT NALTSITVKM SSVLVVTVIL LSYYFARLAI RTLWKNNIFS  60
   61 NSTRLILLVC LLNSIIHQTT MLEIRIRQIY RSIVFASEPC RLPFHFTECE VELFVYYLTT 120
  121 YFSTYSVFSL AFDRLISCYT PKYYLSHQYY VSIFLLFIQL IFTLGTYYVG LYGVPPLGYE 180
  181 PFCNYAPKLA TNFVKINDFR TLIMGICIIV TVFVYYLSVK SEKQIQQTSY SPGERYIAYE 240
  241 NVAASQSVCI LIVLQFACIL ISSLGVNYLR IFKSTLSDEE YNKLAPFFVG VTYANLCLPL 300
  301 VIHCKTKLTI RNRKLRIGVM TSMYGDVGEH INRLKKSWE

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.50
Transmembrane Helix	26	46	0.87
Cytoplasmic	47	60	0.45
Transmembrane Helix	61	81	0.75
Non-Cytoplasmic	82	112	0.53
Transmembrane Helix	113	132	0.53
Cytoplasmic	133	148	0.84
Transmembrane Helix	149	171	0.90
Non-Cytoplasmic	172	198	0.95
Transmembrane Helix	199	219	0.92
Cytoplasmic	220	241	0.93
Transmembrane Helix	242	266	0.80
Non-Cytoplasmic	267	283	0.87
Transmembrane Helix	284	304	0.86
Cytoplasmic	305	339	0.90