YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNNPVCAS DAHMEMYSSK LYTSALFLNL IIATTSMILT GFAIQKLFME SIINISTRMF  60
   61 LFCGLMCCSL HQTAYIVLRI QVIYQVFFKL SEPCNLYYPA IDCKYVTFSL VAGNTGMIFI 120
  121 QSAMTIDRIF ATIFPKLWPK LKYWPGVVLS ILMIACNYAN VQIIFWGDPL TEYVPTCGQF 180
  181 PSKSVNRFQT FLAIALYMSI AHMVINVIIL YINVLQDRQQ SKSFNVNQRY QSREALKSSQ 240
  241 AIFFLSMSQF FACLIYSVFT KVFLEFQLNL SPLQSGLVLA LSYTTPYACI AIPSLIIFTF 300
  301 RFIKNQRLRN INELRSQTET GDECMRKIAK IWEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.89
Transmembrane Helix	21	44	0.88
Cytoplasmic	45	58	0.70
Transmembrane Helix	59	78	0.89
Non-Cytoplasmic	79	104	0.85
Transmembrane Helix	105	126	0.77
Cytoplasmic	127	142	0.82
Transmembrane Helix	143	165	0.90
Non-Cytoplasmic	166	190	0.96
Transmembrane Helix	191	215	0.88
Cytoplasmic	216	240	0.93
Transmembrane Helix	241	260	0.94
Non-Cytoplasmic	261	278	0.87
Transmembrane Helix	279	300	0.91
Cytoplasmic	301	334	0.95