YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-14
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEECPFKA SDDQIILQTS WILRLNIIYC TFLSIGCFVG VAYCIRFMRK HPIFSESTAI  60
   61 LLYLSLAFAV FHDVAHVLSQ WAVMYRSIFY ADDPCNILFD SDDCLSLGRS IVFGISGLIF 120
  121 IHSALSLDGL LATFTPWFYY KQQRMCGIIL AVLMISVSIG VQFYLLPIGE SEKDYLPSCQ 180
  181 FFRKQDAPRA NLFLISSLVL TIINLMVNVT LLFVNKMHSK RTRFDVEFQY QRSEAMMTSE 240
  241 SISVLVIAQI SALGIYAGGS WLFRQAKDEI PVYLYSNLII WVYAISYATV TLPLLIIFCI 300
  301 RYVRRRRQRT IHHITSHKES QDHRMQELRR LWG

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.94
Transmembrane Helix	25	45	0.94
Cytoplasmic	46	58	0.75
Transmembrane Helix	59	76	0.93
Non-Cytoplasmic	77	114	0.88
Transmembrane Helix	115	138	0.81
Cytoplasmic	139	145	0.85
Transmembrane Helix	146	166	0.95
Non-Cytoplasmic	167	191	0.94
Transmembrane Helix	192	214	0.94
Cytoplasmic	215	240	0.90
Transmembrane Helix	241	260	0.90
Non-Cytoplasmic	261	278	0.89
Transmembrane Helix	279	300	0.94
Cytoplasmic	301	333	0.95