YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-22
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTAEDLLD SLKCASKDLS SALTSVTIKF NCIFISTIVL ISYCFILLAI QALLRHNIFS  60
   61 NSTRLILIVC LLNSVVHQTT MMETRVRQIY RSFLFASDPC KLLYRSSDCV VDLYFFFLTG 120
  121 YFSTYSVFSL TSDRLVSHYK SKFYHTHQYF IAISLLVIQL LLTLVSFYIA FYGVSLAGYV 180
  181 SVCIQYPKAA VQYGTINTVR TMVMVCCLIV TGFTYYLSVK SEKQIQKISY SPGERYSAYE 240
  241 NITTSQSVCI FIILQLSCVM LTSIGMNLLL MMGEAMSEGT FTTIALFLPG ITYANLCLPL 300
  301 VIYFKTKLTI RNRKFRIAVM TSMYGDAGEH IARLKKSWE

Type	Start	End	Confidence
Cytoplasmic	1	29	0.76
Transmembrane Helix	30	53	0.88
Non-Cytoplasmic	54	61	0.65
Transmembrane Helix	62	81	0.63
Cytoplasmic	82	148	0.59
Transmembrane Helix	149	171	0.92
Non-Cytoplasmic	172	197	0.87
Transmembrane Helix	198	219	0.90
Cytoplasmic	220	247	0.93
Transmembrane Helix	248	270	0.87
Non-Cytoplasmic	271	282	0.81
Transmembrane Helix	283	304	0.94
Cytoplasmic	305	339	0.95