YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-17
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTELLESL KCASEGMVKA MTSTTMKLNF VFIATVIFLS FYFAGLAIQA LLRNNIFSNS  60
   61 TRHILIVCLL NSIVHQAVTL ETRIHQVYRS FVYSSEPCRL LFHFTECEVE LYFYYLTNYF 120
  121 STYAVFSLTF DRLVSHYKPK YYFSHQYYVS NSLLIIQLLL SLSTYYVGLY GVPLVGYAPI 180
  181 CYYTPRLAVN FSKINDFRTA TMVFCIIVTI FIYYLSVKSE KQIHRTSYSP GERYIACENV 240
  241 ATSQSVCILI VLQFACIMLS SFGVNYIRAR ESLMSEENFN KIAPFFPGVT YASLCLPLVI 300
  301 YFKTKLTIRN RKLRIGVMTS MYGDVGDHMN RLKKSWE

Type	Start	End	Confidence
Cytoplasmic	1	27	0.78
Transmembrane Helix	28	51	0.89
Non-Cytoplasmic	52	60	0.72
Transmembrane Helix	61	80	0.51
Cytoplasmic	81	146	0.58
Transmembrane Helix	147	169	0.79
Non-Cytoplasmic	170	196	0.84
Transmembrane Helix	197	217	0.93
Cytoplasmic	218	239	0.90
Transmembrane Helix	240	264	0.78
Non-Cytoplasmic	265	281	0.89
Transmembrane Helix	282	302	0.91
Cytoplasmic	303	337	0.93