YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srg-59
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTVTTSLE SVQPDPAAQF MTATQLIYGV PSITLMLFFL FYLGNSKIYT NSFYRIVQIS  60
   61 LLVNISCFAN TWFAIRLEKH PSCIFMLKWI ETFLPGALTL AKYHAYWFMH MQFLTTAILS 120
  121 VHRILTVMFA GKFERFCYRW YPAIGISMFV YSHLPKLLWP GFTFEVHIVN GTLMKTRFNL 180
  181 VYVNAININA IFSSIYFILI LTIGIATVVL VTKKLKAVNL PTDRISKKLT RLALVYCFLY 240
  241 TGILLWSVIA SIDSSFPFLP AFIVNHNFTL LTYLSDIMTL SLPYILIAFD SNIQQQVFRK 300
  301 KRRVISVVAT SAMMS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.63
Transmembrane Helix	21	44	0.85
Non-Cytoplasmic	45	53	0.55
Transmembrane Helix	54	75	0.89
Cytoplasmic	76	83	0.58
Transmembrane Helix	84	101	0.61
Non-Cytoplasmic	102	107	0.58
Transmembrane Helix	108	127	0.88
Cytoplasmic	128	136	0.81
Transmembrane Helix	137	155	0.92
Non-Cytoplasmic	156	189	0.91
Transmembrane Helix	190	211	0.95
Cytoplasmic	212	231	0.92
Transmembrane Helix	232	252	0.94
Non-Cytoplasmic	253	269	0.89
Transmembrane Helix	270	293	0.83
Cytoplasmic	294	315	0.94