YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srg-64
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSFTVNLE NVTLSSTTEI LTYIQLTYGI PSFFMMIFTL FLIAFGKVYK SSFYTLVIFD  60
   61 LSTNICVYLN TWIAIRIEMH PNLVFLLKAV EYTIPGSLTW FKYFPYWFFH MHFWTSALLT 120
  121 VHRLSSIFLF HRYESFWSRW YFILLIFAIA CICSHLPKYL WTGFLYEVYI IDDVFICIHF 180
  181 PLALKAAYNV VAVFSVIYFL LNLSMGLITA FMVSKKFQGG STLNASISRK LTKISLTYSV 240
  241 VYTSEVMWSV LNSCNSYLNF LPDFFLKFNN MLLVFASDIF TLSLPFILLI YDSNVKSDLF 300
  301 RITKQSAPGT LLVLTN

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.68
Transmembrane Helix	21	45	0.86
Cytoplasmic	46	52	0.59
Transmembrane Helix	53	75	0.85
Non-Cytoplasmic	76	107	0.71
Transmembrane Helix	108	130	0.82
Cytoplasmic	131	139	0.77
Transmembrane Helix	140	159	0.94
Non-Cytoplasmic	160	189	0.85
Transmembrane Helix	190	213	0.89
Cytoplasmic	214	233	0.85
Transmembrane Helix	234	251	0.77
Non-Cytoplasmic	252	270	0.75
Transmembrane Helix	271	291	0.90
Cytoplasmic	292	316	0.85