YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-19
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFHATLARS FINALSVRGD DDAVDRLNYY YTPLILAVCC LVISAKQYGG TPIECWVNPH  60
   61 SRESMEEYIE SYCWIQNTYW IPMYENVPDD HTAREEKQIG YYQWVPFILI AEALMFSLPC 120
  121 IFWRLCSFQS GLNIQTLINA ACDGQALLDA SDRQKAVEAI TTNFVDNLDL QSPNGRIRAR 180
  181 GWIARIKFSR FLSGQCLSIL HSFTKLLYSM NVVAQFLILN ACLKSSDFLF FGFQVLNDIW 240
  241 AGRPWTETGH FPRVTLCDFE VRYLANLNRY TVQCALLINI INEKVFAFLW CWYMILAIIT 300
  301 TCSFIYWIAN SFIHSEKVDY VMKFIQIAES SEFKKLQKFE KDATVERLYT VIAFAPHLLD 360
  361 TFVSDFLKSD GVLMLRMISN HAGDMIVVQL VRNLWQEFRE RNWREFEEHE EMKDVEMRRI 420
  421 HGGERIVISN PGQTKSFL

Type	Start	End	Confidence
Cytoplasmic	1	27	0.77
Transmembrane Helix	28	48	0.50
Non-Cytoplasmic	49	103	0.71
Transmembrane Helix	104	126	0.73
Cytoplasmic	127	187	0.80
Transmembrane Helix	188	207	0.49
Non-Cytoplasmic	208	215	0.47
Transmembrane Helix	216	233	0.42
Cytoplasmic	234	285	0.56
Transmembrane Helix	286	309	0.89
Non-Cytoplasmic	310	438	0.56