YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srh-16
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEMHCQTPP ISVYKTLMHT LHILDVPLYL IVIIALFKIK SNIFQTYKYY LIWHTIINVL  60
   61 TEFHSCFLML PVVHLPYPLL RATGILAEFG FSGLFLFYVL SAFIIQTSFS IIEMFYFRYK 120
  121 ASVFDYQSRN FTKFVKLFIY SFRVLTILFP GITFGTFFYS IERQEEYKKE LAMIDPSIPE 180
  181 VTCYSSVLAA PFSDSVMIST MITWLACIIC AFSVIPSTTI YLNSHLRSTK NMSPGVVRMQ 240
  241 KMLLSSLIVQ TFVHGFMLGI PNILFVYTIF FGAHLEVAAY AAFMCLTFHG FLSTIAMIMY 300
  301 TKPIHIAILE TFQRFCSSLK NIIGCLKPQN QFH

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.84
Transmembrane Helix	18	39	0.86
Cytoplasmic	40	49	0.81
Transmembrane Helix	50	73	0.86
Non-Cytoplasmic	74	93	0.72
Transmembrane Helix	94	117	0.83
Cytoplasmic	118	136	0.84
Transmembrane Helix	137	158	0.88
Non-Cytoplasmic	159	200	0.88
Transmembrane Helix	201	222	0.96
Cytoplasmic	223	242	0.92
Transmembrane Helix	243	266	0.86
Non-Cytoplasmic	267	277	0.69
Transmembrane Helix	278	300	0.90
Cytoplasmic	301	333	0.97