YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGVPFIDRW LSETFKPKTF DDAVDRLSYV TTATLLAFFS IMVSCKQYVG SAIQCWMPME  60
   61 FKGGWEQYAE DYCFIQNTFF IPERSEIPGD VEDRQKAEIG YYQWVPIVLA IQAFMFYLPS 120
  121 WIWSSLYKQC GLDFPSVISE AEALRSQDSE TRTKGVNKLV DFIGDILDTR SKNEYGRFYC 180
  181 YRFGKGLGSM TSMLYICIKL MYLANVFVQF IILNKFLGNE TFLWGFHTFA DLYAGREWQD 240
  241 SGVFPRVTLC DFSVRKLANV HRYTVQCVLM INMFNEKIYL FIWFWFVFVL ITTFINTLCT 300
  301 IYRLSFDSSR HNYIRSLLSG PVNNFKDEKA MIASFANNGL KQDGVLLMRF IDDHAGAMVT 360
  361 KEICEELFKK HGENLQHNRD FHHGHSTKST SPGLEEGHHE HLYTPEKMKL MAPDYPIKHA 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	28	0.78
Transmembrane Helix	29	50	0.57
Non-Cytoplasmic	51	101	0.57
Transmembrane Helix	102	123	0.70
Cytoplasmic	124	191	0.73
Transmembrane Helix	192	213	0.78
Non-Cytoplasmic	214	279	0.74
Transmembrane Helix	280	302	0.92
Cytoplasmic	303	420	0.79