YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE33040
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSETFVPSI FSYKHRLLHL SVLFFIVPYW YSYYNDQHRL SSYSVETAMF LSWERAIVKP  60
   61 GAMFKKAVIG FNCNVDLIVS GVRVVDALNT TCSEGKDQET LETLADLHQT FAHFFQRGAA 120
  121 AERYMSSEDQ FNLLVAESEA STRSHHHIGG NAALMADRIA ANFPSTEVYL VGPIGPRSQA 180
  181 LLHPSVKRTN STRILKDELH VILEYKQGEI LGDWVAPSSS RFITSHDHFS GSMVVMEMFF 240
  241 KAIAQFRPDL VVITGVHLLE FQSKEMRQEK MRLIKRNLLQ IPPKVPIHLE LGSLADEIFS 300
  301 TDVINKILPY VDSLGINEQE LTFLSHIANG PHMEEYPVQA GTVHVHKVVE MLHWLLKTYG 360
  361 RDPTGQIASK TGYRLSRIHF HCLTYHIMVS SGTDWSNLAA GLAAGARIAG RLSCNIGANT 420
  421 MDSELLEIRT PANFVLDKKI EKNYQFEAHN PIASWMREDV LFVFTPVLVC RLPSKTVGID 480
  481 DAISATGLLY SQFYRLNRPT HW

Type	Start	End	Confidence
Cytoplasmic	1	15	0.78
Transmembrane Helix	16	34	0.80
Non-Cytoplasmic	35	502	0.98