YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mab-3
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQIKLRRS QQKSRDGKEP KRNSRRKSKD MDMEMMVVTA TDGQKIIGTS ASPSPSSTTD  60
   61 TMSPSLSMSP PCSPSPLLAQ YTLTLAAPIP IYPPIPMNQQ LISLQQQQFL MSIIQNMAPS 120
  121 IGQQAPLLPG ISAGSVSSAA ILNEFWSIKI VCFPSLLNFP HNLFLSLVSN SMIFSYFLEF 180
  181 SLFTNFVIFS NFFIHFSPSE PTNLPIFFSS SRPLVLFQKS PFFLNSNNLF VSHQTTYYLS 240
  241 MSLRHLIMSS ISSKIPKFHR YSSVCIDFPL SPPKLS

Type	Start	End	Confidence
Cytoplasmic	1	124	0.67
Transmembrane Helix	125	142	0.50
Non-Cytoplasmic	143	144	0.27
Transmembrane Helix	145	165	0.40
Cytoplasmic	166	171	0.36
Transmembrane Helix	172	195	0.73
Non-Cytoplasmic	196	276	0.53