YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32969
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTGGLSDFA DFGEEDANCT QGIQWIKDVF TDCVDTDLKL LGFIIGLISL ALWLIPLFPQ  60
   61 LWQNYKTKKC EGLSLAFLFF WLVGDTCNML GAILTNQQPI QKIIGVYYII QDLVLWTQYG 120
  121 YYLKIYNRPT TSSARSNTIV VPVLALASVG SFFVFESALP PVGDHRVKRS FLESLNHQEG 180
  181 LPLEGILKMW PIFTSYTDML GYIIGSMAAV CYFGGRIPQI IKNYRHSSCE GLSLTMFYII 240
  241 VAANFTYGIS VLLATTSWLY LLRHLPWLAG SLGCCCFDAV IISQYYLYRP KTPLAEDTER 300
  301 AGLLNSQDDS D

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.77
Transmembrane Helix	40	62	0.85
Cytoplasmic	63	72	0.74
Transmembrane Helix	73	95	0.86
Non-Cytoplasmic	96	102	0.70
Transmembrane Helix	103	123	0.73
Cytoplasmic	124	135	0.87
Transmembrane Helix	136	155	0.92
Non-Cytoplasmic	156	198	0.89
Transmembrane Helix	199	215	0.97
Cytoplasmic	216	233	0.84
Transmembrane Helix	234	256	0.89
Non-Cytoplasmic	257	264	0.74
Transmembrane Helix	265	287	0.86
Cytoplasmic	288	311	0.95