YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	odr-4
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRNRRKSKT TATSHPELHL EKVDPMKTES MILFDVQLQE WVTKSAKNHE FVLSDKGIPA  60
   61 SAYFLLGSFC SDGDIHVAYA SKCPVHSSAL EENATESSKM LEDEWMSDHA ERLLRMLPGG 120
  121 IHVVGIAWFS DKKTFSDRKS HIHKTLGRIQ KMNNQITTAN VDDSISDNMI TVFFETPSTT 180
  181 PIGAIIDVTN RGNDSAQKVQ FQKLEWISLV TNASARIVHN VPVDTGRPTD FYSDLVVATK 240
  241 NFVNNLFQCE FTLLDGEIRD DKEPLIKDIK KNKKTTIEAQ LFLNPLYNRE LGAIDDIASN 300
  301 MHEVLFDIEV RAAVPIRSTV KDAIRAIKHH LVRNLFARVE LHYESMEVVE EERSPKTGIT 360
  361 VHQLPRPATT VLYTHPAILI NDFLFEADNV EDAQKNFDDM MDLQTSIEHV DEGWERALTP 420
  421 EEMEAVRTPI EDLHFVDFDG SSDSWCTTKT ILITIALIIG LLASIIYFTV AHS

Type	Start	End	Confidence
Non-Cytoplasmic	1	449	0.78
Transmembrane Helix	450	471	0.92
Cytoplasmic	472	473	0.72