YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	odr-4
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRNRRKSKT TATSHPELHL EKVDPMKTVT ESMILFDVQL QEWVTKSAKN HEFVLSDKGI  60
   61 PASAYFLLGS FCSDGDIHVA YASKCPVHSS ALEENATESS KMLEDEWMSD HAERLLRMLP 120
  121 GGIHVVGIAW FSDKKTFSDR KSHIHKTLGR IQKMNNQITT ANVDDSISDN MITVFFETPS 180
  181 TTPIGAIIDV TNRGNDSAQK VQFQKLEWIS LVTNASARIV HNVPVDTGRP TDFYSDLVVA 240
  241 TKNFVNNLFQ CEFTLLDGEI RDDKEPLIKD IKKNKKTTIE AQLFLNPLYN RELGAIDDIA 300
  301 SNMHEVLFDI EVRAAVPIRS TVKDAIRAIK HHLVRNLFAR VELHYESMEV VEEERSPKTG 360
  361 ITVHQLPRPA TTVLYTHPAI LINDFLFEAD NVEDAQKNFD DMMDLQTSIE HVDEGWERAL 420
  421 TPEEMEAVRT PIEDLHFVDF DGSSDSWCTT KTILITIALI IGLLASIIYF TVAHS

Type	Start	End	Confidence
Non-Cytoplasmic	1	451	0.78
Transmembrane Helix	452	473	0.92
Cytoplasmic	474	475	0.72