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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: mca-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKSQNVTAV TETNGVAAAL GGHHTSPDTN AGKTKDAKEF GCSLGDLRGL MEARGAEAIV  60
   61 RLSTEHEGVE GLCKKLKTDS LVGLNGEQAD LDRRRHVYGA NTIPPAKSKG FVRLVLDACK 120
  121 DPTLVILVLS GFINLALSFY EPTSAAEDAT QHLVNATTAA ILANGTFMST TEAPSEGHGT 180
  181 AWIEGVAILL CVIVVVLVTA VNDYSKERQF RSLQEKIETG QKFSVIRNGE AIDVPVSDLV 240
  241 VGDIARVKYG DLLPADGFLI QSNDLKIDES SLTGESDHIK KSIESDPVLL SGTYAMEGSG 300
  301 KMLITAVGVN SQTGIIMTLL GAGKAGIGDD DSTSTSSSSS SSSSSSGSSS NGSSDSSKSG 360
  361 DDDLTAKSVL QAKLSKLALQ IIYCGTTIAI IALIVLVTRF CLDHYVFEKN EFSLVDIQMF 420
  421 VKFFIIAVTI LVISIPEGLP LAIALALTYS VRKMMHDNNL VRHLDACETM GNATSICSDK 480
  481 TGTLTTNRMT VVQSYINGNH YTSQEAQPHG ANLPGSTGPI LMEAISVNCA YNSMIVEPTK 540
  541 AGEQIQQLGN KTECGLLGFV NRLGGDYAAI RKKFPEHDLT KVYTFNSSRK CMMTVVPYAE 600
  601 NGQNIGYRVY CKGASEIVLG RCTYLIGSDG KPHQLTGDRL KEITSTIIHE MANSGLRTIC 660
  661 VAYKTIIKKG TRDVEKTEIE FAEDSDIDWD DEDAMYQNFT GIAICGIQDP VRPEVPVAIS 720
  721 KCKKAGITVR MVTGDNIMTA RAIAMSCKIL EPGEDFLALE GKEFNERIRD ENGKVSQAKL 780
  781 DEIWPRLRVL ARAQPADKYT LVKGIIDSKA TPQREIVAVT GDGTNDGPAL KKADVGFAMG 840
  841 IAGTDVAKEA SDIILTDDNF TSIVKAVMWG RNVYDSISKF LQFQLTVNVV AVITAFVGAV 900
  901 TVSDSPLKAV HMLWINLIMD TLASLALATE QPTDELLERK PYGRKKSLIS RTMVKNILCH 960
  961 ALYQLIIIFV IFFYGDTIFG IKTGLYAPLF APPSQHFTLV FNAFVMMTVF NEINARKVHG1020
 1021 ERNVFKGLAS NRVFCVIWVT TFIAQIIIVQ FGGAWFSTAP LTLQQWIVCL VLGFSTLIWG1080
 1081 QIVATIPSKK LPKAWKVGKG EVQPANLHIN GDYNVRARSR AVTLRRSGKS LWVRGMFIIG1140
 1141 NHLRVLRAFG MEKSEKAAFG RTAPAMTAEA AERWRASYRK YRHQKHQEKK ATAETAESVK1200
 1201 SADWAKEQKE KKKTFKQIKQ VARGKSLDKD SKKHHKKRKD QTNVDMEDIE LN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle