YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32948
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.98
Transmembrane Helix	47	67	0.89
Non-Cytoplasmic	68	88	0.88
Transmembrane Helix	89	108	0.89
Cytoplasmic	109	116	0.83
Transmembrane Helix	117	138	0.91
Non-Cytoplasmic	139	144	0.80
Transmembrane Helix	145	167	0.91
Cytoplasmic	168	178	0.93
Transmembrane Helix	179	200	0.90
Non-Cytoplasmic	201	217	0.86
Transmembrane Helix	218	241	0.88
Cytoplasmic	242	288	0.95
Transmembrane Helix	289	310	0.85
Non-Cytoplasmic	311	318	0.80
Transmembrane Helix	319	342	0.92
Cytoplasmic	343	351	0.85
Transmembrane Helix	352	371	0.95
Non-Cytoplasmic	372	403	0.94
Transmembrane Helix	404	427	0.88
Cytoplasmic	428	441	0.83
Transmembrane Helix	442	463	0.86
Non-Cytoplasmic	464	472	0.76
Transmembrane Helix	473	493	0.91
Cytoplasmic	494	500	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAQAPDEK FQIPTISMSK MDFDDVPSKE DGNDSESDTD MVTDRKAIVI ASLVMFIAAI  60
   61 ENTVVGMSEW PYMNQIDKEA DAQFFGNATA ASKLFHAISA LVFAIWCHRF QSFQIPLIAG 120
  121 RFIAFGACLL YLCVEMFGSG RRYVMALCYI LFGVASSSST ILRAYVAAIS RHEDRPQAYS 180
  181 GLNAATMISI IVGPIIQAAF SSIHYPGWEI FPNVKFHIYS APVWVAAATN FISITIIKCC 240
  241 LKELPRRAKS DMKKNQSFLT IAGVKSRIEK VSQMNLNWRI VVLCWIQKMN ATLSVVTLTT 300
  301 LTSVIFMTNY GWSGAKTVLA MSITLGAVGI LAVIVAGLYF FCNLGNFLQQ RIAFLIGLVI 360
  361 FMSMYVFTYP WTPVSNPVPP YNALADVGCN STTYSWCDTS YAPAAPLLLI VIAVVMGIGI 420
  421 PLSSVALDAI YSKTLGPINQ SVMQGAMIVA EDVILILGPI YSSGVYTYSG FETLWTINGI 480
  481 VVALGSIYWI ANFSRLRQYS