YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32911
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGEVVETPD WPAPIAEIGD KPVFRRMFHF GTIFAFSTIT MIGAVTTFFA LQWMPVTSYM  60
   61 GLFNTLTFLL WNYLTIGNLF NASFFGPGYV PRGWRPENAA DEKKLQFCVP CNGFKVPRSH 120
  121 HCSKCDRCCM KMDHHCPWIN NCVGHRNHQY FLRFLFFSVV GCIHSTIIDG SALYHAIFAG 180
  181 WYQKYGDGTE PIILLTPISF IALVFAIAMA IAVALALTFL FITQLRYVIR NRNGIEDYIH 240
  241 GKSLNMRKVH EGDDEEEIEW IKSLGEWTYP YDLGWKRNLR EVFIGIFDGR TRGNGTWWPV 300
  301 VNGCTQFTFT IDQLLQKQSK RGRSRIITIS EDFAGTCCAS RKFGCKVWMK QPIIDGKCLK 360
  361 VSAGETIVAT RGIAGWVYGF RESDPRNKGW FPLEISNMKK KNDTKPDETS TSEDETSQDT 420
  421 ATTEEEEKKN Q

Type	Start	End	Confidence
Cytoplasmic	1	29	0.96
Transmembrane Helix	30	51	0.93
Non-Cytoplasmic	52	67	0.77
Transmembrane Helix	68	89	0.83
Cytoplasmic	90	153	0.97
Transmembrane Helix	154	177	0.88
Non-Cytoplasmic	178	197	0.90
Transmembrane Helix	198	222	0.92
Cytoplasmic	223	431	0.95