YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32910
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	99	0.85
Non-Cytoplasmic	100	129	0.92
Transmembrane Helix	130	148	0.92
Cytoplasmic	149	156	0.83
Transmembrane Helix	157	177	0.95
Non-Cytoplasmic	178	183	0.91
Transmembrane Helix	184	206	0.89
Cytoplasmic	207	214	0.86
Transmembrane Helix	215	237	0.86
Non-Cytoplasmic	238	248	0.81
Transmembrane Helix	249	268	0.97
Cytoplasmic	269	308	0.99
Transmembrane Helix	309	331	0.93
Non-Cytoplasmic	332	348	0.82
Transmembrane Helix	349	369	0.81
Cytoplasmic	370	379	0.84
Transmembrane Helix	380	399	0.95
Non-Cytoplasmic	400	404	0.84
Transmembrane Helix	405	426	0.88
Cytoplasmic	427	438	0.76
Transmembrane Helix	439	464	0.75
Non-Cytoplasmic	465	476	0.76
Transmembrane Helix	477	496	0.90
Cytoplasmic	497	523	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRISNRSV VVGVRDAAGG SGGGGSSGDK DNPNEFDALY ADSQNSSVPN TSPILLGNLE  60
   61 MRCHRFRWNL SMKHRIRWVI FILTWLQLGS VMNCVDVFSF SMVYMEKNST IAAEAGLDDI 120
  121 YIYTLEEKSS LISAMAIGSL IGMYPQNVLM QKYGPRLVLT FASLLCAVVT AFMPWALDTN 180
  181 YHVALVFRIF QGILYSADFG VVGYVCSKWS PIKEVGMSLA ALSGFTAARA VIQLPLAGWT 240
  241 TSNVGWRPIY YILSIILFIS TIIWFLFYRD DPEDHCLMTH HELQHIGGGT KRDKTKKTPY 300
  301 REVLTDKSVW AVWVAGFADI FASFVFLVYG AQYYQYLGMD IQANAWLNSM KGYLFIGVRV 360
  361 FAGIASDRIR TLPEKSKLRL FNTISLQVPA FFLMLVVLLP REHPYLHVIC ITFYQASFGF 420
  421 NCGGFYKGAA LISRQFSYFV IGYIQLFKSL ATLLEPVLFS LLVLPGSEDS ELSWTSYFLI 480
  481 HALTLTVANT VYVLLARSEP ADFVLNAELE LSKPQLPCET SIN