YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fut-1
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARSIKLFF ARWKYLMFAC CITYLLVIYA PISKSEQKDW KEGEIELSND HELDVPILQK  60
   61 EELKPQQRPS FEENVPKKKT FNFNPVGKEP FDVEEVLTSS DIKLEERMTA TVIPGQKRLI 120
  121 LSWNAGHSQD NLQGCPDWNC EFTQVRARAP DADAVLIAHM DNDFVPKPNQ YVVYFSQESP 180
  181 ANSGIQIPRP DYINMTLGFR HDTPAGSPYG YTVKLGAKSR KTGQVVDANL VNGKAKGAAW 240
  241 FVSHCQTNSK REDFVKKLQK HLQIDIYGGC GPMKCARGDS KCDTMLDTDY HFYVTFENSI 300
  301 CEDYVTEKLW KSGYQNTIIP LVLKRKLVEP FVPPNSFIAI DDFKSVKEMG DYLNYLMNNK 360
  361 TAYMEYFEWR HDYKVVFLDG SHHDVLERPW GFCQVCRMAW TEPRQKVLIP NWDAYWRQTC 420
  421 EKDGTLVDSI PLD

Type	Start	End	Confidence
Cytoplasmic	1	10	0.77
Transmembrane Helix	11	32	0.72
Non-Cytoplasmic	33	433	0.99