YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gar-2
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFTKDNEIV RPPTPPDDNT YSNPNFSMIS EQLTNGFSRQ EPSSVIERES TAPCVSPEPS  60
   61 HASLENEFNE NHHAHFKPEL SLPFIDADSV SSMVGHDDLR RAMSIRISRS VSMQGTARAT 120
  121 PVIEIVENLE EALKICENLE ELREDENKNE EEKQKNGLEN GGMNHVIIAN DEQQPSTSKE 180
  181 SEQKEEMTPE NHDPNEVKVP LIAVSRVESV KSTAGGKVRR LITQMRSHSI RSKRKANKNK 240
  241 EYKSRSENRA RKALRTITFI LGSFIILWTP FYVLATIYGF CETCKASPSF NTLYTISYYL 300
  301 CYMNSPLNPF CYAMANQQFK KTLTRIFKGD FRRV

Type	Start	End	Confidence
Cytoplasmic	1	252	0.94
Transmembrane Helix	253	275	0.84
Non-Cytoplasmic	276	295	0.81
Transmembrane Helix	296	315	0.55
Cytoplasmic	316	334	0.59