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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CE32865
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDNLAIEI DPPDDVEYDV EAGFNSSTCH LMHNFEEERP TSLVASIKES AISSKRKLKY  60
   61 YCSFICTPIK KLLSTFKLLI IIGLYSFIGA HIFMYLEVPT DLEAREDGFH QRKIAREVMV 120
  121 LNLRAIFYDN REDREERWKH AILKFEEDIG LEEPVIETVW TFWMSFLYAG TIFTTIGYGN 180
  181 IACKTRAGQI ATMVYAFVGI PIMLVMLTSL NNFLLKWIKL ITNGVSDMTL YIGVRLGITV 240
  241 IRQDEVQKRL RYTKLAKTMK RWKLSKHGAP SSIAISNSEE NRLNSTPEDD EEEEEIHQDP 300
  301 PVLSTLIATV AWIILSAAVF CLFEDWTFFT SFYFCFISLT TIGLGDVTPA NPEYMIATFG 360
  361 VVIVGLSMLT VCIDVLQEKL AQMYMALLQK LLTEYMEAVK SGDPNAASAM MAGFQGRAKF 420
  421 LMPLISKNEG AKVMDKFKQD CSKKGIDPPP VLTNINPETG MPAFANAPKE DFRDYIEVAD 480
  481 EKFADEQQRL SQTPLSKSTD FLQSPTPRPT VTVAVTQTAR PQACVSLEVQ AGTTMGKFHD 540
  541 YGSQTQTESS DEGIQTDYSI DFDDEKNKEP EKVMADIGTQ YEIVLLTSIG IQPEVSSIYI 600
  601 GAGLSDHSDE ESGCESEDDS DDSDVSSDEE SELKSSAKYK ETPLPFEVED PGMMSLGLQS 660
  661 PPIEITPFTD DESAASDARS SPVPPTSSKR SKLTPKTIKV GKSLSMDSTD TVIHVKPVGV 720
  721 NDDEKRSEEK ESKDQETNDD LKTESGQEKK RRKKKKKLRS KKTREHELRF LKNSGNQASP 780
  781 LLMDCSTQYE IFTVESGSQY DVKGRSRKCQ TKLSSINHEQ LQGIRETVQK LRRRESEMSK 840
  841 VSNVSESDWD SETGKEPEVA EISLDLSVVA LGVDESGKVV DIPKEVPKAV QRHESFSPTS 900
  901 ELTTASESLS AEKVHLDSED EELESLEELE LYTTDAGIQT ETKVMLDKQD NATPKLLEII 960
  961 KNCSTQTTFS TFHIPQKVYE SASTSSDEED HKNDGEDEKQ KKSKQEVFFM TNTGVQTMHT1020
 1021 SFHIDEKPKF VEENLQTQNT HDGIKEQSAV DEEMPLFLKN SDCQTVEVIS FECATSTENV1080
 1081 SFVGDVETSE GSIVVATMQT DEPLLVSDES QTEQTKSSEI DSQTDPPSTK SFICQTELIT1140
 1141 SSEVEVQAVR AVEFSLVECQ TDALNHEEVE VQTELDISVS QSQTDNVDVG HIEMQTDMTI1200
 1201 TNASESQTDV LSVGDTEMQT DEKEIFTIES QTEQPSTELQ ETQTDDVSFA GDVPTTDQIT1260
 1261 QSESAQVFDS ETQYALSIEE KDVQATPISF ETQTQHSIEL EVKSCQTEGV RMKNKKSQVF1320
 1321 WNANSIDLPI IFIRVIPYFQ KICLGRRRLN AVSSQNR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle