YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-39
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYLEIPTFI PSVSVAHDTS LAIEIGEPVM PSVVSDCLSP FGDKLSITER AFNAFMVPYF  60
   61 DFMIGYPTHR SFKPPYNPID IRSIVPEASF VFLNSNPFVD FPRPTLTKTI QIGGISVDSN 120
  121 ELRSQKLDET WSEILKLREK TMLVSFGSML YSKDMPFKNK IALKNAMEKF KNVTFIWKYE 180
  181 DDSSDEFAKG IENIHFAKWV PQTALLADSR LSAFLTHAGL GSINELSYLG KPAILCPQLF 240
  241 DQMRNAKMLV RHNGSIELSK YDLGDSEKIV NAFQAILFDS SYAKNALKLA EQLENQPIKP 300
  301 KEMMVKHAEF AARFGRLPSL DPYSRKMTFI EYFLIDVAAI SMVVLIAVVF VITKMFKILC 360
  361 NKTSVKGKIE

Type	Start	End	Confidence
Non-Cytoplasmic	1	331	0.90
Transmembrane Helix	332	353	0.91
Cytoplasmic	354	370	0.82