YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.99
Transmembrane Helix	19	40	0.92
Non-Cytoplasmic	41	54	0.76
Transmembrane Helix	55	76	0.88
Cytoplasmic	77	98	0.86
Transmembrane Helix	99	122	0.87
Non-Cytoplasmic	123	136	0.80
Transmembrane Helix	137	156	0.95
Cytoplasmic	157	167	0.87
Transmembrane Helix	168	189	0.93
Non-Cytoplasmic	190	209	0.91
Transmembrane Helix	210	231	0.93
Cytoplasmic	232	244	0.92
Transmembrane Helix	245	265	0.93
Non-Cytoplasmic	266	298	0.89
Transmembrane Helix	299	321	0.91
Cytoplasmic	322	340	0.92
Transmembrane Helix	341	361	0.93
Non-Cytoplasmic	362	368	0.72
Transmembrane Helix	369	390	0.89
Cytoplasmic	391	403	0.94
Transmembrane Helix	404	425	0.93
Non-Cytoplasmic	426	431	0.84
Transmembrane Helix	432	451	0.95
Cytoplasmic	452	483	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEKEEEVSL NQIKLKPRIS LFNGCTIIIG VIIGSGIFVS PKGVLLEAGS AGMSLLIWLL  60
   61 SGVFAMIGAV CYSELGTLIP KSGGDYAYIY EAFGPLPSFL FLWVALVIIN PTSLAIIAIT 120
  121 CATYALQPFY SCPVPDVVVN LFAGCIIAVL TFINCWDVRM ATRTNDFFTI TKLIALTLII 180
  181 TCGGYWLSLG HIDNLVMPDV AEGSQTKLSA IAMAFYSGVF SFSGFSYLNF VTEELKNPFR 240
  241 NLPRAIYISI PIVTIVYMLV NIAYFSVLTV DEILDSDAVA ITFADKILGT FGSKILMPLF 300
  301 VSFSCVGSLN GILITCSRMF FSGARNSQLP ELFAMISIRQ LTPIPSLIFL GGTSIVMLFI 360
  361 GNVFQLINYL SFAESLVVFS SVAGLLKLRF TMPENVLNAR PIKISLLWPI LFFLMCLFLL 420
  421 ILPFFHSDPW ELIYGVFLVL SGIPIYVLFV YNKYRPGFIQ SVWIGFTHFI QKLFYCVPEL 480
  481 SSS