YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: rol-3
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFIGEDLYA VRKEGESAQP VLVQIDTNHI DNTVHKVSIG GDVTRIDAMT SDWVGNRLIF  60
   61 VAGTNVYQLS LEPFLSTSLL NPHKLIQLTS ATDAKQLAYD PFMNTAYLLT KNGSLFALDM 120
  121 NKNTEANLAL TVSCLASQTV TWMMTEFAWN RASSPKIYAL TWNGLIYVDL TEDSQCNEVR 180
  181 IDWTKFGDKG LKDISSFAIA DKLFAFVTSS EMLIYGKDTV TPITIANPPL KQILAVSQSS 240
  241 QPYPERSCFE LPSSKGIVFS IVNEGKTGSF LEVTKSSSSS SCQEVSMPQT QYEIYFTRKN 300
  301 TDKVKHVRSF SDRIHVENGI LDKETDYDVT VTWLNRYSPA SGVSASKSFR TGFGYPSAPR 360
  361 DPHAIPVTPD TVYLYWNLPE TLNAPISEIK YKISQQAAGI SVPTSIAVIA LSETVSSNIS 420
  421 SDTTSCLINP CRVKIANLRP SNEYKFWVTA THISHLDAAT ILKDDDAVSS EAVARTLDVP 480
  481 GTLRPDNVTG SSLLLRWNGL EPEHRPSSIA VQYRESGGAN NEWQFPMNVS FEPDVTTELV 540
  541 PITNLLSATS YDYRFVATYT GTYTIDGKVL AFKEDYLQLP QQARTKAGVP TAPQFVEAKQ 600
  601 DEEGWIVTWK EPMSDGGSPI TSYAVETRIN KTAEWEIAER GLDGWKTWWR PGKSDTTSST 660
  661 STSSTEVSEF RIRAANIEGF GAYAYTEDKK EEKEEEPSSV LPYLLLLSII FLLAAMILVA 720
  721 CFWLKSRRRQ QQKKREAEDE RNCIRLDVVA NMNFSSSHQS LPPEYESEMR SSLSYTVLFL 780
  781 NNLISDLPVV NYSTVTFNDY IDTCAYGIVH SGTAEEVPMS WEKDVRVAIK KLKPNHSFQE 840
  841 KMMFMKEAIL LNNLDHPNIV KELGVCITPG QELILLEYME GGNLLKFLQK STPNEYQSSE 900
  901 LSPRDLLSIS VDIARGMNYL ERLPHVHKNL SARKCLLAGR PGVTKLEMGM SKELSNGQVN 960
  961 RSDLENMEIV RWMAPEVLKD FQFSSKSDVW AYGVLLYEVF SFGEVPYGDK DNRRIMTDVR1020
 1021 NGSVLPIPSY CPSKRIYKVI KQCLTSDSTK RANFATILKI FETFRDDQKC QDDKPIQFND1080
 1081 GTDNTNFSAS QDSTSSREPP SPSHRMRDFI DTRDLEPPSP SHLNQSFGGF EHPYEGERPA1140
 1141 TMWNGSGARN SAKNSIGRSM KKEKLRNPIH SMDDLVARNQ RPLSIHSEDT ESTDYGASSS1200
 1201 MYSPGSSNRI SSQVDPPIGR LSSAPGIGIV NDAFESSNPS LNLSRSWAGL SREVNQNPAG1260
 1261 AGSSGTLPQH TNSAGHLRLP GVQVGAGGGR VYRNASGGGG PSNRGRISQV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle