YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: rol-3
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLHLRSLA ILFLLFFLLH DVVKSATVFS SSLKTCQSQC EERNLAYPLD SGEVHWTGLA  60
   61 EYNYSSRISS CRHGCEDVDE RESKCDVKCS EEGIVSNACK QGCRAVLVSF LAQAQALLIQ 120
  121 VHVNMEVLET SMKLKWEFPE TLAEELKEIA NADIFWFSQT KPLNGILGWR WTSLPQNSFR 180
  181 NSSLSSEVHV PFEHGEHVEV RLALSYRNQV LVSRTTTYHL PLSKSGTTLE VIGQLQLSDD 240
  241 RVAVCYRTNQ PTPKFKLTIM TLNDNTINTE ESIARCHLFS NLPRDNCCKA SISAIDEHGA 300
  301 TTAFVEIKLD FYVNQVEIEL VSVASSRLIF SNGTHLLESE IDQYALGDSA TVIPFPLPTD 360
  361 DTITAIAGIS DTTIAIGSSK GSLWTYQMSA NQTDEDQPSS VIQLKTVGEM DTKINQIEID 420
  421 HIQRTLYAVQ HDKGIIRCKL RTMEAEESPN CVLIVNNDAL NAPKEITLDS VNGHVYTLNA 480
  481 DNKVYRTEMV AFNATGIETV ASLQYLQDMS PSNGIFFDVS KFLLYSALQN GSMMTLNPVT 540
  541 DHVHIFKDVG YADIQHFRIK NDLIYWMKKK CGETDADENC IFAENLQRSE EDIPNKFTYS 600
  601 SSLMSFGVLE EILLKPRITA VSTIAMLTSD KTARVSWDES NTLPFQAQGS SWRNFTYFLK 660
  661 VTAPDITDFS PIEIYTSNTE MKIDVTPGNI YNAQVQVCSD DFCSIPTSTS NTALPDLGDV 720
  721 VPFVFTKRQA DDIISVDILG NIIPADDSVK IVEKLQYPHV LDNTTKTVYL AGDHSMGIFK 780
  781 KYLDDTAGLP KPFKDGLFVE MMSIMPARSI ILIASSYKIT SYRLPTTFDF EYFSCEEPLE 840
  841 ACSEVMGISS DDTTGMVHFL TQARNGTITL WESDPENRTP RDIASVPSIV PFRRFLILHD 900
  901 KMILVTKNNH IVQTDKKLKV VNVATELERV DHILPLRYAT ISHKIEFSDE IKFIDGSKTN 960
  961 LQWTLSPPLE AGTVLFKVSI FREKMGGQDP PIITIQSETN FTIPSEVLEA WSSAQRFDVS1020
 1021 VQAMTPWATA VLNRTGLTAP VKPPTSPTQL RIFATQQKTV DGPRALISFF WGPPSEWNGT1080
 1081 PYQYIVNCTK DDGKLITIDS SELKPLVKLF AIDSTNSLIS INDLAHEEPR RETRQVAQPV1140
 1141 KLEYQAMAFI GEDLYAVRKE GESAQPVLVQ IDTNHIDNTV HKVSIGGDVT RIDAMTSDWV1200
 1201 GNRLIFVAGT NVYQLSLEPF LSTSLLNPHK LIQLTSATDA KQLAYDPFMN TAYLLTKNGS1260
 1261 LFALDMNKNT EANLALTVSC LASQTVTWMM TEFAWNRASS PKIYALTWNG LIYVDLTEDS1320
 1321 QCNEVRIDWT KFGDKGLKDI SSFAIADKLF AFVTSSEMLI YGKDTVTPIT IANPPLKQIL1380
 1381 AVSQSSQPYP ERSCFELPSS KGIVFSIVNE GKTGSFLEVT KSSSSSSCQE VSMPQTQYEI1440
 1441 YFTRKNTDKV KHVRSFSDRI HVENGILDKE TDYDVTVTWL NRYSPASGVS ASKSFRTGFG1500
 1501 YPSAPRDPHA IPVTPDTVYL YWNLPETLNA PISEIKYKIS QQAAGISVPT SIAVIALSET1560
 1561 VSSNISSDTT SCLINPCRVK IANLRPSNEY KFWVTATHIS HLDAATILKD DDAVSSEAVA1620
 1621 RTLDVPGTLR PDNVTGSSLL LRWNGLEPEH RPSSIAVQYR ESGGANNEWQ FPMNVSFEPD1680
 1681 VTTELVPITN LLSATSYDYR FVATYTGTYT IDGKVLAFKE DYLQLPQQAR TKAGVPTAPQ1740
 1741 FVEAKQDEEG WIVTWKEPMS DGGSPITSYA VETRINKTAE WEIAERGLDG WKTWWRPGKS1800
 1801 DTTSSTSTSS TEVSEFRIRA ANIEGFGAYA YTEDKKEEKE EEPSSVLPYL LLLSIIFLLA1860
 1861 AMILVACFWL KSRRRQQQKK REAEDERNCI RLDVVANMNF SSSHQSLPPE YESEMRSSLS1920
 1921 YTVLFLNNLI SDLPVVNYST VTFNDYIDTC AYGIVHSGTA EEVPMSWEKD VRVAIKKLKP1980
 1981 NHSFQEKMMF MKEAILLNNL DHPNIVKELG VCITPGQELI LLEYMEGGNL LKFLQKSTPN2040
 2041 EYQSSELSPR DLLSISVDIA RGMNYLERLP HVHKNLSARK CLLAGRPGVT KLEMGMSKEL2100
 2101 SNGQVNRSDL ENMEIVRWMA PEVLKDFQFS SKSDVWAYGV LLYEVFSFGE VPYGDKDNRR2160
 2161 IMTDVRNGSV LPIPSYCPSK RIYKVIKQCL TSDSTKRANF ATILKIFETF RDDQKCQDDK2220
 2221 PIQFNDGTDN TNFSASQDST SSREPPSPSH RMRDFIDTRD LEPPSPSHLN QSFGGFEHPY2280
 2281 EGERPATMWN GSGARNSAKN SIGRSMKKEK LRNPIHSMDD LVARNQRPLS IHSEDTESTD2340
 2341 YGASSSMYSP GSSNRISSQV DPPIGRLSSA PGIGIVNDAF ESSNPSLNLS RSWAGLSREV2400
 2401 NQNPAGAGSS GTLPQHTNSA GHLRLPGVQV GAGGGRVYRN ASGGGGPSNR GRISQV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle