YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32796
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.81
Transmembrane Helix	109	126	0.65
Non-Cytoplasmic	127	133	0.62
Transmembrane Helix	134	153	0.85
Cytoplasmic	154	166	0.85
Transmembrane Helix	167	199	0.78
Non-Cytoplasmic	200	207	0.86
Transmembrane Helix	208	233	0.85
Cytoplasmic	234	243	0.80
Transmembrane Helix	244	264	0.92
Non-Cytoplasmic	265	308	0.85
Transmembrane Helix	309	330	0.89
Cytoplasmic	331	339	0.79
Transmembrane Helix	340	361	0.90
Non-Cytoplasmic	362	371	0.71
Transmembrane Helix	372	391	0.91
Cytoplasmic	392	401	0.64
Transmembrane Helix	402	421	0.87
Non-Cytoplasmic	422	603	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTHRRKGGS GPPQKPPPRI VDRSSFDADK KKIKVEKLYH KANNPDNDWP FSFGSVFKML  60
   61 LSIRISGAIW GIINDCDEVY NYWEPLHLFL YGEGFQTWEY SPVYAIRSYF YIYLHYIPAS 120
  121 LFANLFGDTK IVVFTLIRLT IGLFCLLGEY YAFDAICKKI NIATGRFFIL FSIFSSGMFL 180
  181 ASTAFVPSSF CMAITFYILG AYLNENWTAG IFCVAFSTMV GWPFSAVLGL PIVADMLLLK 240
  241 GLRIRFILTS LVIGLCIGGV QVITDSHYFG KTVLAPLNIF LYNVVSGPGP SLYGEEPLSF 300
  301 YIKNLFNNWN IVIFAAPFGF PLSLAYFTKV WMSQDRNVAL YQRFAPIILL AVTTAAWLLI 360
  361 FGSQAHKEER FLFPIYPFIA FFAALALDAT NRLCLKKLGM DNILSILFIL CFAILSASRT 420
  421 YSIHNNYGSH VEIYRSLNAE LTNRTNFKNF HDPIRVCVGK EWHRFPSSFF IPQTVSDGKK 480
  481 VEMRFIQSEF RGLLPKPFLK SDKLVEVTRH IPTEMNNLNQ EEISRYVDLD SCDYVVDVDM 540
  541 PQSDREPDFR KMEDNWKPVD SLPFIDVSKS TGFHGLLRAF YVPFLSAKHN VMTTCTLYRK 600
  601 SNL