YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ooc-3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIWVTLLL LVPQLFATQD IDEEFTHENV WKDPNDPTSG ESPPASKRLL SVRNQVQKPD  60
   61 QSLRLILRQL LHETKIDYHL EGSIKKDVQI KISRHSMSVL SKYLKNDEAD LAEEREAVRS 120
  121 ALSNIFSVKP PAPDRTWQDT FVTLQPFIFT LNIFILPAAA FVVLRSIVRP RNFWILVLST 180
  181 ALLVSMYSGY SKKYQEAESR RFAQFQEHAH DSCATEGLLS RMVEILASPF QYRQKSKCLK 240
  241 YIESQTISIF HEISIIEVFS ETISGGFFAF FSGSAKHFNL FFRNLYDGAP LIAQIVMTIF 300
  301 LVLMLGAIRT PFFSYEPIWL NFCSSSIGKI AGWLDGEPPQ QPAPQLLITA KEMKRLEQAR 360
  361 NKKPEMISYP TSEREDVVSG SENGNEKKSD NEREESMKME EDSAPVESSL EDDLSLLGES 420
  421 SEDEDEEKVN ESPAKIDSTT LSESSF

Type	Start	End	Confidence
Signal Peptide	1	17	0.98
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	145	0.97
Transmembrane Helix	146	164	0.88
Cytoplasmic	165	252	0.50
Transmembrane Helix	253	275	0.68
Non-Cytoplasmic	276	287	0.52
Transmembrane Helix	288	312	0.81
Cytoplasmic	313	446	0.49