YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	shk-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDSLIRRLE QVLNVHPEKY QNGCSSQRPS RQPSPVEQLA PIRSHSADFG RAAEMASGNS  60
   61 EEGKGMLLRN GDDRIRLPSP QRGTPDTSST QGHPYTDQIV TINVSGMRFQ TFESTLSRYP 120
  121 NSLLGDRNKR QHFFVSDTNE FFFDRHRTTS SSFTFEIRNY LFESILYIYQ SGGRVKRPEI 180
  181 VPIDIFLKEM RFFQMGDDLL EEFWIAEGYE KPKEVMMPNN KTQRKIWELM EYPDSSLSAR 240
  241 IIAFISIAVI ALSIISFCWE TVPSDIEEKP INNSATAELL DEMDEKHYSP FFWIELMCIL 300
  301 WFTIELILRF ISCPCKVTFA TSVLNIIDFV AIAPFFVNFF FADTSKSNSS MSFAVLRVLR 360
  361 LVRVFRVFKL SRHSVGLQIL GKTFRSSVQE FCLLIFFMAI ALVLFASGMY FAEQGEPNSK 420
  421 FTSIPASFWF VLVTMTTVGY GDLVPLSPFG KVVGGMCAMI GVLTLALPVP IIVANFKHFY 480
  481 RQENRLASMK SKGDDADDDI A

Type	Start	End	Confidence
Cytoplasmic	1	236	0.94
Transmembrane Helix	237	258	0.89
Non-Cytoplasmic	259	290	0.89
Transmembrane Helix	291	311	0.91
Cytoplasmic	312	320	0.71
Transmembrane Helix	321	342	0.88
Non-Cytoplasmic	343	390	0.69
Transmembrane Helix	391	412	0.92
Cytoplasmic	413	420	0.64
Transmembrane Helix	421	444	0.81
Non-Cytoplasmic	445	451	0.61
Transmembrane Helix	452	476	0.86
Cytoplasmic	477	501	0.68