YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32691
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRELISRLVV GLFSVNDTGF RAVAALLMIA EAVLSHLVIL KVNYTEIDWS TYMQQVECYV  60
   61 NKGILNYTQI GGDTGPCVYP AGHLFVFRLL HFFTSSGRNI RAAQHIFQGF YMFNLFMVFR 120
  121 ILHKTMRIPP IVLLLVSITG YRIHSIFVLR LFNDPLAMML FYVAMDRFLE QKWLVGCVFY 180
  181 SLAVSIKMNV LLFAPALFFT LLLNNSYMAT LGYLTVCGLI QLYVGGPFLL YDWKSYLQQS 240
  241 FDLGRVFMFK WTVNWRFLPE EVPPPAGFFL DKRFHAALLV GHLTFLAVFA SYMWFRRLNG 300
  301 LRTSVYLRLF EGITTTTGAV ETYYAFCTSN LIGIAFSRSL HYQFYSWYFH QIPFLLFCDY 360
  361 PHVASVSTIP WRQFLWKVPL LAAVELSWNV YPSTWWSSAL LHVCHVIIFW HLIVTRPARP 420
  421 GDSVSRETLR RLEQRQKMLE QELREHGQVV PKFKFPAFLE EQQEEQVDVR KRMKQPIGEK 480
  481 RTKKQLDAEF ETYFEEQMDG FREEHTIYYT HDGKPQVSGL APLDKPEKMK MHEKVAALYT 540
  541 QALKLQAQLN PNETPTTWKS FKFPKNADKN LLESYLKLHG AGAQQDSEES EISSAEEEAS 600
  601 DDENSGEEEP NTEKIEQNSC KAEASEQESN GGVRRRILVD

Type	Start	End	Confidence
Cytoplasmic	1	18	0.82
Transmembrane Helix	19	40	0.85
Non-Cytoplasmic	41	101	0.79
Transmembrane Helix	102	122	0.79
Cytoplasmic	123	130	0.67
Transmembrane Helix	131	152	0.80
Non-Cytoplasmic	153	177	0.67
Transmembrane Helix	178	202	0.80
Cytoplasmic	203	208	0.61
Transmembrane Helix	209	231	0.86
Non-Cytoplasmic	232	273	0.85
Transmembrane Helix	274	295	0.94
Cytoplasmic	296	315	0.71
Transmembrane Helix	316	336	0.56
Non-Cytoplasmic	337	393	0.47
Transmembrane Helix	394	414	0.87
Cytoplasmic	415	640	0.66