YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-29
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLDEDDDDL KKCNGVNEED ILKAFLEEDF NSQHYDSIWE CLQHNRRAIA VNGFIIVFLI  60
   61 IYTTIGGFIF LNFEFEYQQY MKQNATLEKR LCIESLLNRD NRLRLTRASD VAAAIAERCL 120
  121 TENVKDDRMQ WSFKSAALYS LGILTTLGYG KIEPQTINGR ISTVIYGFFG IPLTVILLTN 180
  181 FGRYLEAMAT RFRRLISCRR RREDEDENVS GSTLFFIVLV YLILGATMIP LMSGQFDFFN 240
  241 GIYYAFICLT AIEYGDIIPQ NNWFLPISVF YMCTGLAIST IALDIGSIYV RKLHFIGKKI 300
  301 KNIANIRIWF GARNLEVREL ITAVGQNIGI DQNVIADIDI DTLVKTAIQV KLGRLSRVPQ 360
  361 THMIVEGIWP PELVPLFMKD GQFPLFVDSE DDLTDMRPKK FSVHFEDEPM MSEIEDTSDS 420
  421 ETAADKSQTT SSRLSPIPRR RAMQAKLNGS TDSDQACHDG VMNVSTTITS DLSTDA

Type	Start	End	Confidence
Cytoplasmic	1	48	0.88
Transmembrane Helix	49	71	0.91
Non-Cytoplasmic	72	163	0.87
Transmembrane Helix	164	185	0.92
Cytoplasmic	186	208	0.90
Transmembrane Helix	209	231	0.92
Non-Cytoplasmic	232	266	0.81
Transmembrane Helix	267	290	0.88
Cytoplasmic	291	476	0.87