YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ncx-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEGEIVFED NQTEALVEIG IVDTEQYERS DYFYIELSPP IWAKKMNDLS RIQERFQRRM  60
   61 ERKRGSSVAS ESKDSNTENA LAPAEKSTRA ASVDLLQPSS DPRRSSQTNS PHLTSRFRNR 120
  121 LGSWIAGMKG GNGDDEVTTS LTPSQLEIAE MGKPRLGEFT KCQITIRESK EFQGIVDRMI 180
  181 KNANTRIMLG THSWREQFME ALVVSAGDDD DDEGEDGEDG EEKEPEEPGC MDYVMHVLTV 240
  241 PWKLTFATIP PTDYFGGWAT FVVAIFMIGV LTAVVGDLAS QFGCWVGLKD AVTAISFVAL 300
  301 GTSVPDTFAS KVSAVQDKYA DNAVGNVTGS NAVNVFLGIG IAWSMAAIYH WNQGTKFLVD 360
  361 PGNLGFSVLI FCTEAVLCII VLVLRRNKKV GGELGGPIAL RVRFF

Type	Start	End	Confidence
Cytoplasmic	1	253	0.80
Transmembrane Helix	254	276	0.90
Non-Cytoplasmic	277	290	0.60
Transmembrane Helix	291	309	0.72
Cytoplasmic	310	326	0.80
Transmembrane Helix	327	349	0.84
Non-Cytoplasmic	350	363	0.83
Transmembrane Helix	364	384	0.95
Cytoplasmic	385	405	0.94