YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-51
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQIHFCALT ILAVLPLFLN AANIVFFINA IGKSHLDFGD SLIDSLKEKG HTVDLVIARI  60
   61 NDLAKGNENS KADRFYTLGF KNGSSWHKLN HLTSPFENNP FPIDGFRQYT LIGNQLCEIA 120
  121 LHDEKLHQFL SEKSYDVGVV SVFDYCGIGI LNKAGVSSIT TFNAVPLMSI QTVTIGLPNI 180
  181 ASQVVPLFYT FDLATLSGKL WNLITWAHIN FHQIPTLRKE QELLFQKVYG PSFSINEVID 240
  241 KVDLSFVNSN EIMETPMLIN HRIQYIGGIN LKTPKPVDHH LDNLLSKSSN GTIIFSFGTQ 300
  301 IPGAVYPRYA VRNFVKVFKK YPEYTFLWKY NVQPGEEKLF EDAENVILLD WLPQTDLLYD 360
  361 PRVIGFISHV GLNSFNEASY AGKPIIAIPL FADQPHNARN GVARGTTYLL NKSKLSEESI 420
  421 ENGLRAILFD KSYTESARKL QKMLVEKPTK PKDRFVEWME YAAVNPGLHK IFALPGAKMG 480
  481 NIEYYCVDTI VFIAFSCVTF TYIFFKMAKF SLSFIRLVKK PKHE

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	483	0.97
Transmembrane Helix	484	505	0.65
Cytoplasmic	506	524	0.62