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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cam-1
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPRPEDDDL VIEPADDEGL HYGNASMEGT STGQRPYIRL TSQLRNATKS SGDEVRFKCE  60
   61 ALGTPPLKFI WLKNNGPVEK TKRVKIRDKE NSSRLVITQL DVLDSGYYQC IVSNPAASVN 120
  121 TTSVLRVNNV PDAVKLSQKK GSHHSTKHIA FDEYEDYEMM DRGRLPDEED ADLYRVPDSA 180
  181 AGSNYAPVAV SERWLDGIKY RVGDCVQYRG EACRQYLSNK FVMMTNESRE EMYDIDRNLR 240
  241 AAMLFINGAP TISQKCRQLS QAVACHHMYK VCESDSNNQI VSICKHDCDV IQNDECPSEL 300
  301 ALAAQHELVG DTPKALFPLC SRLSSTSNCI PVMSTALQSS PVAEVNRGHL THWCYVNSGT 360
  361 QYEGTVAQTS SGKQCAPWID STSRDFNVHR FPELMNSKNY CRNPGGKKSR PWCYSKPMGQ 420
  421 EEYCDVPQCP SDMYPHLNDK KVEGSTKGGV SESVTALWDS LDPTMQVALV GGGVFFSLLL 480
  481 LLLFCCACCC RAKKKSQKTR HQNAHCSSAP SVINSAANSA YYRKLNGTST PIMGRVPPHV 540
  541 EMTSLLPSAQ HLGPPPYPMD QHLQQARRFP SQEPIDDNSY KVFEITPSQL SVREKIGEGQ 600
  601 FGVVHSGIYT SGLFAPEPMA VAVKKCRHDA TNAERAQLEQ EIRAVATFDH PNVIKLIGVC 660
  661 YMDNSLLAVF EYMVHGDLHE LLKVRVPPAD HDMGGITEAN AEFLYIATQI ALGMEYLASM 720
  721 SFVHRDLATR NCLVGDTRTI KIADFGLMRT SYGSDYYKML HRSWMPVRWM SKEAIEQGRF 780
  781 SEASDVWSFG VTLWEIWSFG RQPYEGASNQ QVIELVANRH LLECPHNCPT NIYSLMVECW 840
  841 HENIERRPTF SEIRSRLQSW SLASPAHSIL QQHNNRAGSH SGSSGAGRPP THQRGYPSQK 900
  901 LHRRVEGASP LMKRHDANYA YSEDGDSD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle