YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32542
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKQEYLRK ESEIGTLRSV ALGAVTITAF SLGTSILLLP LLFSHAQTVQ STLEHELQFC  60
   61 VLRSHDLFDE LRKVEAVTGQ QSRIKRQYVT GPMGGGGGYG GGGYGHQQQQ QNYGHQGYAQ 120
  121 RPQQPQPVYR PSAPVYQPQP QVQSSICIFG PPGPPGFPGS DGQPGRDGEA GAPGQPGRDG 180
  181 AGGYGGPQQN DCQTCAPARQ GAPGPPGPAG QPGQPGEPGH SDTSSTAGPP GPPGPGGPPG 240
  241 QDGHPGDAGA PGAPGQVVAG PGSVGPPGPQ GPPGLAGPDG QPGHGGGGQP GPQGPPGDDG 300
  301 HPGEDGGAGG PGQPGQDGGS GGSGACDHCP PPRVAPGY

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	43	0.90
Non-Cytoplasmic	44	338	0.99