YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fbxa-40
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGNCLKAVA TRFLKLSNFK QRPNLQNEGV MSSNLLDMPL DVINVVMGKL EPMDLLRLRK  60
   61 VCHSLKSAVN KFGIHFDSIH FELHDHSITL CLDNGFPIYI RAVYGGTTVS YGQRTIEIEE 120
  121 ENFMDVGFKD LKFLLKHVST LGIYNYAKNR KEIIKSFIDF LKPEECFPVD AVEIWNFSFN 180
  181 DVVSFLSYFD DKTLKSIKLN QNEPIEQFEP ITYLDQWTNA KHFGLKATNS NVDSEIIKNL 240
  241 FHFPHFCVYK ITDFPTQLAV KIRDNLMRRS TFQQCTLSVN KLTLNPIEIA RIFKSDYTGD 300
  301 ISRIPESAQM SSPDSSQSKK AVGSHPSARS VFPSMDSSVF TDDDGCEILH STAKTCAPPD 360
  361 PCFPTSPFFC VESPDVTDLS PDKPVEDILK LGTTHTHSLS LSSLSLLVVS SASLPGRAGY 420
  421 ITENTSKASM PQSVAGCLAK EKDDSSTPMC ALFFCLFCFT YYFGFPKSTK SRSGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	447	0.88
Transmembrane Helix	448	465	0.65
Cytoplasmic	466	475	0.56