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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gip-1
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.26
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRQGSEEVE AVQQFLNAFG FHDRDVIKVQ EGLFHSRQLN DVNASRTCVD QFVKKCELRD  60
   61 PNGIKPLRKK IDALMNESVE MNYMMDFLVR CRQAHLFHNE TIRNSPSIGL GSIGGTPTNS 120
  121 IPSSSPFQRR SASRGRVLST LTGDQQTPSI ADSSSRSRAN SSFTAYDNRM LGMERQLAGN 180
  181 MAQRPRSPYT INGIPTTRVQ PISASNQLFT ASNGFTPPNP HLRTTSRREE SPSSSVFPHN 240
  241 SDFERNRGGA PNRAHQLRHP TTSHLLNTSV TSSIRANVNS NSNTPIHSRI GSAITETESN 300
  301 VCECLLSALL GIETRLFTPI HREMKITSTA SLSTTHQAVC SRILPIANTY LLLSHKEPNN 360
  361 TGQMTEALMA AIRRIIGDYI TDIDALRRTR GIKFYQCLPL IDMWQNRLRL LKMAYKIRNL 420
  421 PQLELLENLY ILHAAYSFDS DQKSILDVIL DYTLGVFCNQ MMEWMTTGEI PTSDKWIIEK 480
  481 NEQSGELFLR KIPIFITDSD ARILLEIGKS LPHVESASDS DLEAIDKATT VVRTQLGPKA 540
  541 IFSKILGQIL RILRDVVCGI VMRMVMETGR LKEHVLKSTS FFFLSDPRFT TTLYTIIKEA 600
  601 SQGLRVGSTT LSRQTVSSAL AAALESCQST QNISDKEKKV KKLMFTLDAL TSTGSTPNVS 660
  661 SRMQFVQPLR PRYAPQMDLM KPIFSACDDA YESIFHVIWS IDLARCSTQD ASSQNLPEIQ 720
  721 RFLIKNYSLR ENATCLLNML AHVFSIINST LLRVRCHVSV QLARFLARFL AAIDEKCVDV 780
  781 DDVIAEHRRF VHRATCVVFL KNSDQIEKEL ATLVRSTFDA QEFTQEFGAT WRDVIESTGN 840
  841 DENARKARIA EICQKKTIGA RNLMDSVNVS GGLPLKNRFF FCENLNFPGF LSLKLIFPQF 900
  901 FDRKLVGGLT FWISRPPKKF QNFKLYSKEK RKFTRKTIFN RFFLCFSHIF GLFLVKIRIF 960
  961 YNF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle