YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	coq-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRSIGIAR RSNSINCIVG SNTSTSYSLD ESTKRWISTS TKQPMSLIPT ASSLVASSPP  60
   61 NLKPYLQLMR VDKPIGTWLL YWPCTWSIAM ATPAGQLPSI YMLSLFGAGA FLMRSAGCVI 120
  121 NDLWDKDFDK KVERTKLRPL ACGSLTEKQA IGLLAGLLSS SLAILLQLNW YSVAVGASSM 180
  181 ALVVGYPLAK RFTYWPQFVL GATLNWSVLI AWAELGHFND FGIFLPLYTA TILHTVIYDT 240
  241 IYSHQDKADD IMIGVKSTAL RLGADTKKWL SAFGVGTVAS LTACGIASDQ TWPYYVALAA 300
  301 TTAQLGWQVG TVDIDNGSDC WDKFKSNSWM GIILFSGIVA STLLKEDEKT KESRKNIGDE 360
  361 NFDDVLVTTN

Type	Start	End	Confidence
Cytoplasmic	1	77	0.93
Transmembrane Helix	78	97	0.82
Non-Cytoplasmic	98	101	0.59
Transmembrane Helix	102	124	0.61
Cytoplasmic	125	144	0.59
Transmembrane Helix	145	166	0.61
Non-Cytoplasmic	167	167	0.48
Transmembrane Helix	168	188	0.75
Cytoplasmic	189	193	0.69
Transmembrane Helix	194	215	0.81
Non-Cytoplasmic	216	221	0.68
Transmembrane Helix	222	242	0.74
Cytoplasmic	243	268	0.88
Transmembrane Helix	269	288	0.83
Non-Cytoplasmic	289	325	0.81
Transmembrane Helix	326	344	0.78
Cytoplasmic	345	370	0.86