YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32381
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRASIYRRAR ENSNETSLSW MDTEHRVILN VGGIRHETYS HVLKKIPATR LSRLTPNLAN  60
   61 YDPVLNEYFF DRHPGVFSMI LNYYRTGKLH YPTNVCGPLF EEELEFWGLD ANQVEPCCWM 120
  121 TYTQHRDTQD TLAVIESLDL DGDPPTQEEI AKKFGWEDDY YTGNMSQWQR LKPRVWALFD 180
  181 EPWSSKYARV ISSLSVAFIL ASTCSFILKT DPSFQIPDID VFYSLRVVDE GGFKNYHKTI 240
  241 GTDKPVTSPH PNFFYVDLIC NIWFTIELLI RSLFCPSFHK FVRSPLTIID VISTGAFFFE 300
  301 SLLHAILIQT GSLVTLDFLS MICVLRLFKL TQHFSGLKIL IQTFKASAQE LFLLVFFVIL 360
  361 AIVIFAALVY YAERSQLNKD NQFTSIPLGL WWSLVTISTV GFGDMVPKTY LGMLVGSLCA 420
  421 LMGVLTIALP VPVIVSNFSN LYSHSQARAK LPKKRRRVLQ AHEVKPALLG VKQHHGKHRK 480
  481 KSSSATFNQP PANFKNANGG PSMHDNSASK LMA

Type	Start	End	Confidence
Cytoplasmic	1	189	0.84
Transmembrane Helix	190	208	0.77
Non-Cytoplasmic	209	252	0.89
Transmembrane Helix	253	275	0.77
Cytoplasmic	276	285	0.72
Transmembrane Helix	286	308	0.79
Non-Cytoplasmic	309	312	0.53
Transmembrane Helix	313	330	0.83
Cytoplasmic	331	350	0.80
Transmembrane Helix	351	372	0.94
Non-Cytoplasmic	373	382	0.83
Transmembrane Helix	383	403	0.86
Cytoplasmic	404	410	0.62
Transmembrane Helix	411	435	0.86
Non-Cytoplasmic	436	513	0.84