YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32380
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDIHPKKV LLKTKSWMDT EHRVILNVGG IRHETYSHVL KKIPATRLSR LTPNLANYDP  60
   61 VLNEYFFDRH PGVFSMILNY YRTGKLHYPT NVCGPLFEEE LEFWGLDANQ VEPCCWMTYT 120
  121 QHRDTQDTLA VIESLDLDGD PPTQEEIAKK FGWEDDYYTG NMSQWQRLKP RVWALFDEPW 180
  181 SSKYARVISS LSVAFILAST CSFILKTDPS FQIPDIDVFY SLRVVDEGGF KNYHKTIGTD 240
  241 KPVTSPHPNF FYVDLICNIW FTIELLIRSL FCPSFHKFVR SPLTIIDVIS TGAFFFESLL 300
  301 HAILIQTGSL VTLDFLSMIC VLRLFKLTQH FSGLKILIQT FKASAQELFL LVFFVILAIV 360
  361 IFAALVYYAE RSQLNKDNQF TSIPLGLWWS LVTISTVGFG DMVPKTYLGM LVGSLCALMG 420
  421 VLTIALPVPV IVSNFSNLYS HSQARAKLPK KRRRVLQAHE VKPALLGVKQ HHGKHRKKSS 480
  481 SATFNQPPAN FKNANGGPSM HDNSASKLMA

Type	Start	End	Confidence
Cytoplasmic	1	186	0.84
Transmembrane Helix	187	205	0.78
Non-Cytoplasmic	206	249	0.89
Transmembrane Helix	250	272	0.77
Cytoplasmic	273	282	0.72
Transmembrane Helix	283	305	0.79
Non-Cytoplasmic	306	309	0.53
Transmembrane Helix	310	327	0.83
Cytoplasmic	328	347	0.80
Transmembrane Helix	348	369	0.94
Non-Cytoplasmic	370	379	0.83
Transmembrane Helix	380	400	0.86
Cytoplasmic	401	407	0.62
Transmembrane Helix	408	432	0.86
Non-Cytoplasmic	433	510	0.84