YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32379
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPALLAFFK PAEMASPQRR ESWMDTEHRV ILNVGGIRHE TYSHVLKKIP ATRLSRLTPN  60
   61 LANYDPVLNE YFFDRHPGVF SMILNYYRTG KLHYPTNVCG PLFEEELEFW GLDANQVEPC 120
  121 CWMTYTQHRD TQDTLAVIES LDLDGDPPTQ EEIAKKFGWE DDYYTGNMSQ WQRLKPRVWA 180
  181 LFDEPWSSKY ARVISSLSVA FILASTCSFI LKTDPSFQIP DIDVFYSLRV VDEGGFKNYH 240
  241 KTIGTDKPVT SPHPNFFYVD LICNIWFTIE LLIRSLFCPS FHKFVRSPLT IIDVISTGAF 300
  301 FFESLLHAIL IQTGSLVTLD FLSMICVLRL FKLTQHFSGL KILIQTFKAS AQELFLLVFF 360
  361 VILAIVIFAA LVYYAERSQL NKDNQFTSIP LGLWWSLVTI STVGFGDMVP KTYLGMLVGS 420
  421 LCALMGVLTI ALPVPVIVSN FSNLYSHSQA RAKLPKKRRR VLQAHEVKPA LLGVKQHHGK 480
  481 HRKKSSSATF NQPPANFKNA NGGPSMHDNS ASKLMA

Type	Start	End	Confidence
Cytoplasmic	1	192	0.83
Transmembrane Helix	193	211	0.77
Non-Cytoplasmic	212	255	0.89
Transmembrane Helix	256	278	0.76
Cytoplasmic	279	288	0.72
Transmembrane Helix	289	311	0.79
Non-Cytoplasmic	312	315	0.53
Transmembrane Helix	316	333	0.83
Cytoplasmic	334	353	0.80
Transmembrane Helix	354	375	0.94
Non-Cytoplasmic	376	385	0.83
Transmembrane Helix	386	406	0.86
Cytoplasmic	407	413	0.62
Transmembrane Helix	414	438	0.86
Non-Cytoplasmic	439	516	0.84