YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32378
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNLQRKESW MDTEHRVILN VGGIRHETYS HVLKKIPATR LSRLTPNLAN YDPVLNEYFF  60
   61 DRHPGVFSMI LNYYRTGKLH YPTNVCGPLF EEELEFWGLD ANQVEPCCWM TYTQHRDTQD 120
  121 TLAVIESLDL DGDPPTQEEI AKKFGWEDDY YTGNMSQWQR LKPRVWALFD EPWSSKYARV 180
  181 ISSLSVAFIL ASTCSFILKT DPSFQIPDID VFYSLRVVDE GGFKNYHKTI GTDKPVTSPH 240
  241 PNFFYVDLIC NIWFTIELLI RSLFCPSFHK FVRSPLTIID VISTGAFFFE SLLHAILIQT 300
  301 GSLVTLDFLS MICVLRLFKL TQHFSGLKIL IQTFKASAQE LFLLVFFVIL AIVIFAALVY 360
  361 YAERSQLNKD NQFTSIPLGL WWSLVTISTV GFGDMVPKTY LGMLVGSLCA LMGVLTIALP 420
  421 VPVIVSNFSN LYSHSQARAK LPKKRRRVLQ AHEVKPALLG VKQHHGKHRK KSSSATFNQP 480
  481 PANFKNANGG PSMHDNSASK LMA

Type	Start	End	Confidence
Cytoplasmic	1	179	0.85
Transmembrane Helix	180	198	0.78
Non-Cytoplasmic	199	242	0.89
Transmembrane Helix	243	265	0.77
Cytoplasmic	266	275	0.73
Transmembrane Helix	276	298	0.79
Non-Cytoplasmic	299	302	0.53
Transmembrane Helix	303	320	0.83
Cytoplasmic	321	340	0.80
Transmembrane Helix	341	362	0.94
Non-Cytoplasmic	363	372	0.83
Transmembrane Helix	373	393	0.86
Cytoplasmic	394	400	0.62
Transmembrane Helix	401	425	0.86
Non-Cytoplasmic	426	503	0.84