YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE32377
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYLSIHEDD TSMSSSERTI ERGFSRYGRK RSSVRMLLDE VNMTDRKTSW MDTEHRVILN  60
   61 VGGIRHETYS HVLKKIPATR LSRLTPNLAN YDPVLNEYFF DRHPGVFSMI LNYYRTGKLH 120
  121 YPTNVCGPLF EEELEFWGLD ANQVEPCCWM TYTQHRDTQD TLAVIESLDL DGDPPTQEEI 180
  181 AKKFGWEDDY YTGNMSQWQR LKPRVWALFD EPWSSKYARV ISSLSVAFIL ASTCSFILKT 240
  241 DPSFQIPDID VFYSLRVVDE GGFKNYHKTI GTDKPVTSPH PNFFYVDLIC NIWFTIELLI 300
  301 RSLFCPSFHK FVRSPLTIID VISTGAFFFE SLLHAILIQT GSLVTLDFLS MICVLRLFKL 360
  361 TQHFSGLKIL IQTFKASAQE LFLLVFFVIL AIVIFAALVY YAERSQLNKD NQFTSIPLGL 420
  421 WWSLVTISTV GFGDMVPKTY LGMLVGSLCA LMGVLTIALP VPVIVSNFSN LYSHSQARAK 480
  481 LPKKRRRVLQ AHEVKPALLG VKQHHGKHRK KSSSATFNQP PANFKNANGG PSMHDNSASK 540
  541 LMA

Type	Start	End	Confidence
Cytoplasmic	1	219	0.80
Transmembrane Helix	220	238	0.74
Non-Cytoplasmic	239	282	0.88
Transmembrane Helix	283	305	0.76
Cytoplasmic	306	315	0.72
Transmembrane Helix	316	338	0.79
Non-Cytoplasmic	339	342	0.53
Transmembrane Helix	343	360	0.83
Cytoplasmic	361	380	0.80
Transmembrane Helix	381	402	0.94
Non-Cytoplasmic	403	412	0.83
Transmembrane Helix	413	433	0.86
Cytoplasmic	434	440	0.62
Transmembrane Helix	441	465	0.86
Non-Cytoplasmic	466	543	0.84