YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ser-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLRAIDSIR DSVINASSAV STTTLPPLDI PMTSMKPPSI IPTVELVLGT ITYLVIIAMT  60
   61 VVGNTLVVVA VFSYRPLKKV QNYFLVSLAA SDLAVAIFVM PLHVVTFLAG GKWLLGVTVC 120
  121 QFFTTADILL CTSSILNLCA IALDRYWAIH NPINYAQKRT TKFVCIVIVI VWILSMLISV 180
  181 PPIIGWNNWQ ENMMEDSCGL STEKAFVVFS AAGSFFLPLL VMVVVYVKIF ISARQRIRTN 240
  241 RGRSALMRIQ NAEGDDDYRK MSIKRASVES ARTSSRTDGG SLPKDETTKH MKYHNNGSCK 300
  301 VKVKDVKEDE GNPNPTAVLR KREKISVAKE KRAAKTIAVI IFVFSFCWLP FFVAYVIRPF 360
  361 CETCKLHAKV EQAFTWLGYI NSSLNPFLYG ILNLEFRRAF KKILCPKAVL EQRRRRMSAQ 420
  421 P

Type	Start	End	Confidence
Cytoplasmic	1	11	0.63
Transmembrane Helix	12	30	0.63
Non-Cytoplasmic	31	49	0.87
Transmembrane Helix	50	72	0.92
Cytoplasmic	73	82	0.84
Transmembrane Helix	83	105	0.90
Non-Cytoplasmic	106	122	0.77
Transmembrane Helix	123	143	0.91
Cytoplasmic	144	162	0.87
Transmembrane Helix	163	184	0.96
Non-Cytoplasmic	185	206	0.93
Transmembrane Helix	207	231	0.87
Cytoplasmic	232	335	0.98
Transmembrane Helix	336	357	0.90
Non-Cytoplasmic	358	372	0.95
Transmembrane Helix	373	393	0.73
Cytoplasmic	394	421	0.77