YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	egl-23
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTLKKSVF SRDKHILQKA TPLFVHFLMI VSVGAYAIFG ALVMRSLESR TVTSIEKKTD  60
   61 VHRRHVNLTN FQHPPTPITL EQRHRRRRRH NETALEDHLS EKLSREKRAA AHIMRSRKCV 120
  121 ISVIKKMSSM ECSFDTLDEK LVKALDECYH VAVEHNTHVN HVLFTNSKEE VESVGEEAEE 180
  181 DVSEWSFMDS LLFAFTVITT IGYGNVAPRT FGGRLFVIGY GLIGIPFTLL AIADLGKFIS 240
  241 EMMVEAKSFC RKTWKKLKKA WNPNFIRAKD LSNTDIEEKI LDNEKIENEP ETSEVSEEED 300
  301 DLTETEATSL FILFLVYIAF GGFMLAAYEP DMDFFKAVYF NFVTLTSIGL GDIVPRSETY 360
  361 MLITIVYIAI GLALTTIAIE IAADALKKLH YFGRKIENVG NVAIWFGGKK ITMKALVKNL 420
  421 GDQFNLPTTV VKNLNLDHFV DQAIKVEEGE IETLRPPPYE PPSDRFEAEF ADEPECEWIR 480
  481 DPTPTPPPSP QPVYRLPSPK PVTPEPLPSP TITDVSLAIA TPSPEESDDD QELILPSPEP 540
  541 SPVREPTPPP PPREPTPREP TPEPEPVREP TPPPPPPAKP RPLTAAEIAA QKRKAYSEEA 600
  601 WRRYQEYQKQ WKKFRQTQKT PAPSGASTSG ASTSKPSGTS PESGAGVCTG PSTRSQSITS 660
  661 VASGKTSRSA TPESKKSSHL SGSSRRESGG K

Type	Start	End	Confidence
Cytoplasmic	1	20	0.69
Transmembrane Helix	21	44	0.86
Non-Cytoplasmic	45	186	0.74
Transmembrane Helix	187	207	0.74
Cytoplasmic	208	214	0.51
Transmembrane Helix	215	235	0.89
Non-Cytoplasmic	236	306	0.63
Transmembrane Helix	307	328	0.89
Cytoplasmic	329	336	0.53
Transmembrane Helix	337	354	0.83
Non-Cytoplasmic	355	360	0.57
Transmembrane Helix	361	383	0.88
Cytoplasmic	384	691	0.69