YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fut-6
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQIGGATCT WRYLGRFVTL GIYASVALFV WYTLVPTRSK HKDSIAINNN NADPATALIP  60
   61 VHTKNVVIYA ATKFFGHPIT TERFLATCPD VQNYCRITQE ESEFDNADAV LFHNADYRGS 120
  121 TDKFKKMKSQ RKPGVPYVLW SLESPTNDMF RPDSHMINWT MTYRTDSDVW APYGTIVKLK 180
  181 NPVEVDLNAI WEGKTKTATW LASNCITQNH RFDLIKKIID NGFEIDIWGN CGKQVSQCAG 240
  241 VDNQESPCVL ELIKPYKFYI SMENSNCKDY VTEKFWKALN DRMTIPIVLA RKYYKDLGVP 300
  301 DSAYIAVDDY ATLDEFLAHV KKVNKEKDLF LSYHQWRKEW KVIIGSGFSG WCTLCNKLQD 360
  361 KDYILKNPKS YKDVAWWHSF EMCNNQIASK YL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.85
Transmembrane Helix	13	35	0.88
Non-Cytoplasmic	36	392	0.91